Transcript assembly, differential expression and regulation for RNA-Seq Ultrafast memory-efficient short read alignerĪ suite of programs designed to quickly group sequences Perl tools for computational molecular biology Suite of utilities for comparing genomic features Toolkit for manipulating BAM (genome alignment) files See also About R and R Studio Server and About Python and JupyterHub server help pages.ĭe novo, parallel, sequence assembler for short reads See Home directory quotas for important storage-quota related information. Your default directory will be your Home directory. Accessing a POD node with your web browser will take you to an application login page where your BRCF account credentials can be used to access the application's web interface. The following web application software is available on all PODs. Web-based application R Studio and Python JupyterHub software Let us know if there is additional software you would like to have installed. Some PODs also have additional software installed which is unique to that POD. The /stor/system/opt directory on your system contains installation directories for these tools, which can be added to your PATHas needed. Note that some tools that have many sub-program binaries, or for which multiple versions are installed, are not available on the standard PATH. All POD compute servers have identical Ubuntu 18.04 Operating System configurations.Ī number of additional tools and packages have been installed on all compute servers, as listed below.
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